Extracting Biomolecular Interactions Using Semantic Parsing of Biomedical Text

We advance the state of the art in biomolecular interaction extraction with three contributions: (i) We show that deep, Abstract Meaning Representations (AMR) significantly improve the accuracy of a biomolecular interaction extraction system when compared to a baseline that relies solely on surface- and syntax-based features; (ii) In contrast with previous approaches that infer relations on a sentence-by-sentence basis, we expand our framework to enable consistent predictions over sets of sentences (documents); (iii) We further modify and expand a graph kernel learning framework to enable concurrent exploitation of automatically induced AMR (semantic) and dependency structure (syntactic) representations. Our experiments show that our approach yields interaction extraction systems that are more robust in environments where there is a significant mismatch between training and test conditions.Comment: Appearing in Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence (AAAI-16

An Energy-driven Network Function Virtualization for Multi-domain Software Defined Networks

Network Functions Virtualization (NFV) in Software Defined Networks (SDN) emerged as a new technology for creating virtual instances for smooth execution of multiple applications. Their amalgamation provides flexible and programmable platforms to utilize the network resources for providing Quality of Service (QoS) to various applications. In SDN-enabled NFV setups, the underlying network services can be viewed as a series of virtual network functions (VNFs) and their optimal deployment on physical/virtual nodes is considered a challenging task to perform. However, SDNs have evolved from single-domain to multi-domain setups in the recent era. Thus, the complexity of the underlying VNF deployment problem in multi-domain setups has increased manifold. Moreover, the energy utilization aspect is relatively unexplored with respect to an optimal mapping of VNFs across multiple SDN domains. Hence, in this work, the VNF deployment problem in multi-domain SDN setup has been addressed with a primary emphasis on reducing the overall energy consumption for deploying the maximum number of VNFs with guaranteed QoS. The problem in hand is initially formulated as a "Multi-objective Optimization Problem" based on Integer Linear Programming (ILP) to obtain an optimal solution. However, the formulated ILP becomes complex to solve with an increasing number of decision variables and constraints with an increase in the size of the network. Thus, we leverage the benefits of the popular evolutionary optimization algorithms to solve the problem under consideration. In order to deduce the most appropriate evolutionary optimization algorithm to solve the considered problem, it is subjected to different variants of evolutionary algorithms on the widely used MOEA framework (an open source java framework based on multi-objective evolutionary algorithms).Comment: Accepted for publication in IEEE INFOCOM 2019 Workshop on Intelligent Cloud Computing and Networking (ICCN 2019